PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G395700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 358aa    MW: 39687.3 Da    PI: 6.7225
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G395700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.2e-14173219354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Aqcoe3G395700.1.p 173 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 219
                        79*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-12173219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-15174228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-15174226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-13176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.64E-5183222No hitNo description
Gene3DG3DSA:3.30.70.2609.5E-6255330No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MCGKKEDDGD CSQSIHTLQG YQEQFFLQQQ LQQQQQQQYN DGFLGAGGGV GRGGLLFPEV  60
SPIIPWSFPQ VQAFNPVHFT SNPIRDHDPF LVPPPTSSYG ALFNRRASSL QFAYDGSSSD  120
HHLRILSSDP LGQTGHHHHH HHQSGSTPFG LQSELGKMTA QEIMDAKALA ASKSHSEAER  180
RRRERINNHL AKLRSLLPST TKTDKASLLA EVIQHVKELK RQTSQIAEAS PVPTETDELT  240
VDASDEDGKF IIKASLCCED RSDLLPELIK TLKALRLRTL KAEITTLGGR VKNVLFITGE  300
EEEDSKNNID QQQQAINSIQ EALKAVMERT TGDDSSSGSI KRQRTNINIL DHQQRSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818961e-42LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132641e-42LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007046318.11e-170Basic helix-loop-helix DNA-binding superfamily protein
SwissprotQ9S7Y11e-104BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A0B0N1U51e-171A0A0B0N1U5_G
STRINGVIT_01s0011g02940.t011e-164(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-81bHLH family protein